Machogu noted that the ministry has prescribed the maximum allowable fees to charge at each level so schools must "strictly adhere to prevailing policies and guidelines regarding illegal levies."
MPs had voiced concerns over parents incurring transactional charges saying this will add more burden to them.
Judge Mwita noted that the government will not suffer any prejudice if the orders are extended to April 17.
The High Court on Wednesday suspended the implementation of the new payment process, pending its determination.
The interim conservatory order suspended a circular that Education Principal Secretary Belio Kipsang on January 31, 2024, ordering all fee payments to be made through the eCitizen.